Index

_

__call__() (ell1fit.spin_stats.ScatterFit method) (ell1fit.templates.UniformCubicTemplate method) _bounds_in_local_coordinates() (in module ell1fit.fitting) _build_parameters_from_models() (in module ell1fit.models) _build_posterior_functions() (in module ell1fit.posterior) _calculate_absolute_phases() (in module ell1fit.phase_utils) _calculate_phases() (in module ell1fit.phase_utils) _compare_phaseograms() (in module ell1fit.profile_plotting) _evaluate_uniform_cubic_floored() (in module ell1fit.templates) _evaluate_uniform_cubic_floored_parallel() (in module ell1fit.templates) _event_column() (in module ell1fit.events) _format_energy_string() (in module ell1fit.results_io)

_get_outroots() (in module ell1fit.outputs) _load_and_validate_models() (in module ell1fit.models) _load_events_for_all_files() (in module ell1fit.events) _make_outroot_getter() (in module ell1fit.outputs) _mjd_to_sec() (in module ell1fit.phase_utils) _pc_like() (in module ell1fit.likelihoods) _prepare_fit_setup() (in module ell1fit.pipeline) _profile_score() (in module ell1fit.refinement) _read_event_list() (in module ell1fit.events) _second_order_coefficients() (in module ell1fit.phase_utils) _times_from_pepoch() (in module ell1fit.events) _trace_phase_0_likelihood() (in module ell1fit.posterior)

A

add_circular_orbit_numba() (in module ell1fit.phase_utils) add_ell1_orbit_numba() (in module ell1fit.phase_utils) add_figure_format_argument() (in module ell1fit.plotting)

apply() (ell1fit.orbit_plot.AxisScale method) assign_logpriors() (in module ell1fit.priors) axis_scale() (in module ell1fit.orbit_plot) AxisScale (class in ell1fit.orbit_plot)

B

baseline_values (ell1fit.setup_types.FitSetup attribute)

C

calculate_result_array_from_samples() (in module ell1fit.mcmc_utils) centre (ell1fit.orbit_plot.AxisScale attribute) chi2 (ell1fit.spin_stats.ScatterFit attribute) chi2_formal (ell1fit.spin_stats.ScatterFit attribute) coeffs (ell1fit.spin_stats.ScatterFit attribute) corner_plot_kwargs() (in module ell1fit.plotting) correlation() (ell1fit.information.InformationBudget method)

coupling (ell1fit.information.SegmentInformation attribute) cov (ell1fit.spin_stats.ScatterFit attribute) covariance() (ell1fit.information.InformationBudget method) create_new_parfile() (in module ell1fit.create_parfile) create_template_from_profile_harm() (in module ell1fit.templates) cumulative() (ell1fit.information.InformationBudget method) current_figure_format() (in module ell1fit.plotting)

D

default_chain_file() (in module ell1fit.eccentricity) default_moves() (in module ell1fit.mcmc_utils)

dilution (ell1fit.information.SegmentInformation attribute) dof (ell1fit.spin_stats.ScatterFit attribute) draw_eccentricity_posterior() (in module ell1fit.eccentricity)

E

eccentricity_and_omega() (in module ell1fit.eccentricity) eccentricity_summary() (in module ell1fit.eccentricity) eccentricity_summary_from_run() (in module ell1fit.eccentricity) effective (ell1fit.information.SegmentInformation attribute) ell1_truncation_error() (in module ell1fit.phase_utils) ell1fit() (in module ell1fit.pipeline) ell1fit.cli module ell1fit.create_parfile module ell1fit.eccentricity module ell1fit.events module ell1fit.fitting module ell1fit.fold module ell1fit.information module ell1fit.information_report module ell1fit.likelihoods module ell1fit.mcmc_utils module ell1fit.models module ell1fit.observed_information module ell1fit.orbit_plot module ell1fit.outputs module ell1fit.phase_utils module

ell1fit.pipeline module ell1fit.plotting module ell1fit.posterior module ell1fit.priors module ell1fit.profile_plotting module ell1fit.refinement module ell1fit.results_io module ell1fit.scaling module ell1fit.setup_types module ell1fit.spin_periodicity module ell1fit.spin_stats module ell1fit.spin_stats_data module ell1fit.templates module ell1fit.update_binary module ell1fit.weighting module energies (ell1fit.setup_types.ObservationSet attribute) eps_component_summary() (in module ell1fit.eccentricity) eps_samples_from_chain() (in module ell1fit.eccentricity) errors (ell1fit.spin_stats.ScatterFit attribute) estimate_uncertainties_from_model() (in module ell1fit.scaling) estimate_weighted_profile_std() (in module ell1fit.templates) exposures (ell1fit.setup_types.ObservationSet attribute)

F

factors (ell1fit.setup_types.FitSetup attribute) fast_phase() (in module ell1fit.phase_utils) figure_path() (in module ell1fit.plotting) figure_size() (in module ell1fit.plotting) files (ell1fit.setup_types.ObservationSet attribute) fit_polynomial_with_scatter() (in module ell1fit.spin_stats)

FitSetup (class in ell1fit.setup_types) fitted_raster_dpi() (in module ell1fit.plotting) floating_mean_periodogram() (in module ell1fit.spin_periodicity) fold_events() (in module ell1fit.fold) folded_profile() (in module ell1fit.phase_utils) format_budget() (in module ell1fit.information_report) frequency_grid() (in module ell1fit.spin_periodicity)

G

get_factors() (in module ell1fit.scaling)

get_flat_samples() (in module ell1fit.mcmc_utils) get_template_func() (in module ell1fit.templates)

I

image_axes() (in module ell1fit.plotting) InformationBudget (class in ell1fit.information)

interp_nb() (in module ell1fit.phase_utils) is_exact() (ell1fit.priors.PriorSpec method)

L

label (ell1fit.orbit_plot.AxisScale attribute) leave_one_out() (in module ell1fit.spin_periodicity) likelihood_func (ell1fit.setup_types.FitSetup attribute) load_eps_samples() (in module ell1fit.eccentricity) load_flat_samples() (in module ell1fit.mcmc_utils) load_orbital_samples() (in module ell1fit.eccentricity)

load_spin_table() (in module ell1fit.spin_stats_data) local_f1_statistics() (in module ell1fit.spin_stats) local_frame_key() (in module ell1fit.mcmc_utils) loglike() (ell1fit.templates.UniformCubicTemplate method) logprior_funcs (ell1fit.setup_types.FitSetup attribute) look_for_list_of_strings_in_string() (in module ell1fit.results_io) look_for_string_in_list_of_strings() (in module ell1fit.results_io)

M

main() (in module ell1fit.cli) (in module ell1fit.create_parfile) (in module ell1fit.fold) (in module ell1fit.information_report) (in module ell1fit.spin_stats) (in module ell1fit.update_binary) matches() (ell1fit.priors.PriorSpec method) models (ell1fit.setup_types.ObservationSet attribute) module ell1fit.cli ell1fit.create_parfile ell1fit.eccentricity ell1fit.events ell1fit.fitting ell1fit.fold ell1fit.information ell1fit.information_report ell1fit.likelihoods ell1fit.mcmc_utils ell1fit.models ell1fit.observed_information ell1fit.orbit_plot ell1fit.outputs ell1fit.phase_utils ell1fit.pipeline ell1fit.plotting ell1fit.posterior ell1fit.priors ell1fit.profile_plotting ell1fit.refinement ell1fit.results_io ell1fit.scaling ell1fit.setup_types ell1fit.spin_periodicity ell1fit.spin_stats ell1fit.spin_stats_data ell1fit.templates ell1fit.update_binary ell1fit.weighting

N

n_files (ell1fit.setup_types.ObservationSet attribute) n_nuisance (ell1fit.information.SegmentInformation attribute) n_parameters (ell1fit.setup_types.FitSetup attribute) n_segments_for() (ell1fit.information.InformationBudget method)

n_shared (ell1fit.information.SegmentInformation attribute) name (ell1fit.information.SegmentInformation attribute) NonInvertibleOrbitError normalize_dyn_profile() (in module ell1fit.profile_plotting) nuisance (ell1fit.information.SegmentInformation attribute)

O

observation_length (ell1fit.setup_types.ObservationSet attribute) ObservationSet (class in ell1fit.setup_types) optimize_solution() (in module ell1fit.fitting)

orbit_is_invertible() (in module ell1fit.phase_utils) order_of_magnitude() (in module ell1fit.scaling) output_root() (in module ell1fit.eccentricity)

P

parameter (ell1fit.orbit_plot.AxisScale attribute) parameter_names (ell1fit.information.InformationBudget attribute) (ell1fit.setup_types.FitSetup attribute) ParameterNotSampled parameters (ell1fit.setup_types.FitSetup attribute) parse_prior_spec() (in module ell1fit.priors) parse_prior_specs() (in module ell1fit.priors) pepoch (ell1fit.setup_types.ObservationSet attribute) pf_weight_versus_energy() (in module ell1fit.weighting) phase_file_name() (in module ell1fit.fold) physical_samples_from_chain() (in module ell1fit.eccentricity)

pletsch_clarke_likelihood() (in module ell1fit.likelihoods) plot_eccentricity_posterior() (in module ell1fit.eccentricity) plot_mcmc_comparison() (in module ell1fit.mcmc_utils) plot_mcmc_results() (in module ell1fit.mcmc_utils) plot_orbit_summary() (in module ell1fit.orbit_plot) plot_phaseogram() (in module ell1fit.profile_plotting) plot_style_context() (in module ell1fit.plotting) point_estimate_fit() (in module ell1fit.fitting) precondition_factors() (in module ell1fit.scaling) predicted_eccentricity_limit() (in module ell1fit.information_report) PriorSpec (class in ell1fit.priors)

R

ranking() (ell1fit.information.InformationBudget method) rate_values() (in module ell1fit.spin_periodicity) raw (ell1fit.information.SegmentInformation attribute) rayleigh_as_likelihood() (in module ell1fit.likelihoods)

read_extra_table() (in module ell1fit.spin_stats_data) read_spin_epoch() (in module ell1fit.spin_stats_data) ref_model (ell1fit.setup_types.ObservationSet attribute) refine_templates_and_solution() (in module ell1fit.refinement) run_periodicity() (in module ell1fit.spin_stats)

S

safe_run_sampler() (in module ell1fit.mcmc_utils) safe_save() (in module ell1fit.results_io) save_figure() (in module ell1fit.plotting) save_flat_samples() (in module ell1fit.mcmc_utils) save_phase_columns() (in module ell1fit.fold) scale (ell1fit.orbit_plot.AxisScale attribute) scatter (ell1fit.spin_stats.ScatterFit attribute) ScatterFit (class in ell1fit.spin_stats) schur_information() (in module ell1fit.information) search_joint_periodicity() (in module ell1fit.spin_periodicity) search_periodicity() (in module ell1fit.spin_periodicity)

secular_spin() (in module ell1fit.spin_stats) segment_information() (in module ell1fit.observed_information) segment_log_likelihood() (in module ell1fit.observed_information) SegmentInformation (class in ell1fit.information) segments (ell1fit.information.InformationBudget attribute) set_figure_format() (in module ell1fit.plotting) simple_circular_deorbit_numba() (in module ell1fit.phase_utils) simple_ell1_deorbit_numba() (in module ell1fit.phase_utils) spectral_window() (in module ell1fit.spin_periodicity) spin_statistics() (in module ell1fit.spin_stats) split_output_results() (in module ell1fit.results_io) split_shared_and_local() (in module ell1fit.observed_information)

T

template_funcs (ell1fit.setup_types.FitSetup attribute) times_from_pepoch (ell1fit.setup_types.ObservationSet attribute) tolerance (ell1fit.setup_types.FitSetup attribute)

torque_luminosity() (in module ell1fit.spin_stats) total (ell1fit.information.InformationBudget attribute) trace_likelihood_over_parameter() (in module ell1fit.posterior)

U

uncertainties() (ell1fit.information.InformationBudget method) UniformCubicTemplate (class in ell1fit.templates) unit (ell1fit.orbit_plot.AxisScale attribute)

update_binary_model() (in module ell1fit.update_binary) update_model() (in module ell1fit.create_parfile) user_prior_sigmas() (in module ell1fit.priors)

W

weights (ell1fit.setup_types.FitSetup attribute)

with_baseline_from() (ell1fit.setup_types.FitSetup method) without() (ell1fit.information.InformationBudget method)

Z

zero_eccentricity_exclusion() (in module ell1fit.eccentricity)